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| + | <span style="color: red">news!(19/10/2015)</span> | ||
| + | <br/> | ||
| + | We will hold<br/> | ||
| + | <span style="color: green">'''''NIG International Symposium 2016 + ROIS Event''''' <br> | ||
| + | and '''''Toyoda Physical & Chemical Research Institute Workshop''''' </span> | ||
| + | <br/>on Jan 8th ~ 13th, 2016. | ||
| + | ='''Japan q-bio week''' (Jan/8/2016~Jan/13/2016)= | ||
| + | We have a series of international symposiums and workshops (Japan q-bio week) 8/Jan/2016 to 13/2016 instead of the annual meeting of the Japanese Society for Quantitative Biology. Most of them will be held as NIG International Symposium 2016. All these symposiums and workshops are organized by the core-members of Japanese Society for Quantitative Biology. | ||
| + | <!-- This year's annual meeting of the Japanese Society for Quantitative Biology will be held as NIG International Symposium 2015, titled [[NIG_International_Symposium_2015_JapanQ-Bioweek|NIG INternational Symposium 2015: Japan Q-Bio week – force, information, and dynamics]] on Jan 7th to 11th, 2016 at Institute of Industrial Science, the University of Tokyo, and Jan 12th and 13th, 2016 at National Institute of Genetics. --> | ||
| + | |||
| + | *'''Tokyo Workshops''' | ||
| + | ** Date: Jan/8/2016 | ||
| + | ** Site:Institute of Industrial Science, <span style="color: red"> Bld. S </span>, the Univ. Tokyo, Komaba | ||
| + | ***[http://symposium.crmind.net/bridging_thr_exp/Home.html NIG International Symposium 2016 satellite workshop (9:00 - 12:00)] '''Bridging Theory & Experiment''' | ||
| + | ***[http://symposium.crmind.net/EIC2015/Home.html Toyoda Physical & Chemical Research Institute Workshop (13:00 - 18:00)] '''Entropy, Information & Control'''<br> | ||
| + | |||
| + | *'''[[IIS_Sympo|NIG International Symposium - Tokyo Symposium: Force, Information and Dynamics: X factors shaping living systems]]''' | ||
| + | ** Date:Jan/9/2016~Jan/11/2016 | ||
| + | ** Site:Institute of Industrial Science, <span style="color: red">Bld. An</span>, the Univ Tokyo Komaba | ||
| + | * '''[http://www.nig.ac.jp/labs/CelArchi/nigsymposium2016/MishimaSympo.html ROIS Event - Mishima Symposium:Quantitative Biology - force, information and dynamics]''' | ||
| + | ** Date:Jan/12/2016~Jan/13/2016 | ||
| + | ** Site:National Institute of Genetics | ||
| + | |||
| + | |||
== What is the Japanese Society for Quantitative Biology <br>(Q-BioJP)? == | == What is the Japanese Society for Quantitative Biology <br>(Q-BioJP)? == | ||
The '''Japanese Society for Quantitative Biology''' ('''Q-BioJP''') is a non-profit organization founded in 2008 that is dedicated to the advancement of the field of quantitative biology.<br> | The '''Japanese Society for Quantitative Biology''' ('''Q-BioJP''') is a non-profit organization founded in 2008 that is dedicated to the advancement of the field of quantitative biology.<br> | ||
| Line 40: | Line 64: | ||
* '''target audience''': Scientists that have already begun a research in the field of quantitative biology or have concrete plans to start. | * '''target audience''': Scientists that have already begun a research in the field of quantitative biology or have concrete plans to start. | ||
* '''objective''': The meeting provides a program for the interdisciplinary community of quantitative biologists to promote sharing of information to solve technical problems in their research, and to promote discussions of our future direction. | * '''objective''': The meeting provides a program for the interdisciplinary community of quantitative biologists to promote sharing of information to solve technical problems in their research, and to promote discussions of our future direction. | ||
| − | <span style="color: green">The | + | <span style="color: green">The 5th Annual Meeting will be held on 23rd - 25th November 2012 at the Convention Hall in Institute of Industrial Science, the University of Tokyo. </span> |
<br> | <br> | ||
| − | [[Events|Japanese | + | [[5th_Annual_Meeting|5th Annual Meeting]]<br> |
| + | [[Events|Japanese Events]] | ||
====2. Caravan - scholarly dissemination of research -==== | ====2. Caravan - scholarly dissemination of research -==== | ||
| Line 56: | Line 81: | ||
<br> | <br> | ||
<br> | <br> | ||
| − | |||
==== Links in English on q-bio.jp ==== | ==== Links in English on q-bio.jp ==== | ||
| − | *[http://www.iis.u-tokyo.ac.jp/What_e/What_e.html | + | *[http://www.iis.u-tokyo.ac.jp/What_e/What_e.html Institute of Industrial Science, the University of Tokyo][[Events|in "Events"]] |
| − | *[http://www.med.osaka-u.ac.jp/index-e.html | + | *[http://www.med.osaka-u.ac.jp/index-e.html Graduate School of Medicine/Faculty of Medicine, Osaka University][[Events|in "Events"]] |
| − | *[http://www.nig.ac.jp/index-e.html | + | *[http://www.nig.ac.jp/index-e.html National Institute of Genetics][[Events|in "Events"]] |
| − | *[http://www.jsbi.org/en | + | *[http://www.jsbi.org/en Japanese Society for Bioinformatics][[Events|in "Events"]] |
| − | *[http://www.springer.com/physics/book/978-3-540-40824-6 | + | *[http://www.springer.com/physics/book/978-3-540-40824-6 Synergetics by Hermann Haken][[Documents|in "Documents", recommedned text books]] |
*[http://www.elsevierdirect.com/ISBN/9780123497031/Differential-Equations-Dynamical-Systems-and-an-Introduction-to-Chaos| Differential Equations Dynamical Systems and an Introduction to Chaos by Dr. Morris W. Hirsch, Dr. Stephen Smale and Dr. Robert Devaney][[Documents|in "Documents", recommedned text books]] | *[http://www.elsevierdirect.com/ISBN/9780123497031/Differential-Equations-Dynamical-Systems-and-an-Introduction-to-Chaos| Differential Equations Dynamical Systems and an Introduction to Chaos by Dr. Morris W. Hirsch, Dr. Stephen Smale and Dr. Robert Devaney][[Documents|in "Documents", recommedned text books]] | ||
| − | *[http://www.perseusbooks.com/perseus/book_detail.jsp?isbn=0738204536 | + | *[http://www.perseusbooks.com/perseus/book_detail.jsp?isbn=0738204536 Nonlinear Dynamics And Chaos With Applications To Physics, Biology, Chemistry, And Engineering by Steven H. Strogatz][[Documents|in "Documents", recommedned text books]] |
| − | *[http://press.princeton.edu/titles/112.html | + | *[http://press.princeton.edu/titles/112.html Random Walks in Biology by Howard C. Berg][[Documents|in "Documents", recommedned text books]] |
| − | *[http://www.cambridge.org/us/catalogue/catalogue.asp?isbn=0521783372 | + | *[http://www.cambridge.org/us/catalogue/catalogue.asp?isbn=0521783372 Biological Physics of the Developing Embryo by Gabor Forgacs and Stuart A. Newman][[Documents|in "Documents", recommedned text books]] |
| − | *[http://www.springer.com/mathematics/mathematical+biology/book/978-0-387-75846-6 | + | *[http://www.springer.com/mathematics/mathematical+biology/book/978-0-387-75846-6 Mathematical Physiology by James Keener, James Sneyd][[Documents|in "Documents", recommedned text books]] |
| − | *[http://www.garlandscience.com/textbooks/0815341636.asp | + | *[http://www.garlandscience.com/textbooks/0815341636.asp Physical Biology of the Cell by Rob Phillips, Jane Kondev, Julie Theriot][[Documents|in "Documents", recommedned text books]] |
*[http://www.weizmann.ac.il/mcb/UriAlon/bookUri.html An Introduction to Systems Biology - Design Principles of Biological Circuits by Uri Alon][[Documents|in "Documents", recommedned text books]] | *[http://www.weizmann.ac.il/mcb/UriAlon/bookUri.html An Introduction to Systems Biology - Design Principles of Biological Circuits by Uri Alon][[Documents|in "Documents", recommedned text books]] | ||
*[http://www.micro-manager.org/| micromanager][[Documents|in "Documents", image processing tools]] | *[http://www.micro-manager.org/| micromanager][[Documents|in "Documents", image processing tools]] | ||
| − | * | + | *[http://www.mathworks.com/products/image/demos.html MathWorks Image Proecssing Toolbox][[Documents|in "Documents", image processing tools]] |
*[http://homepages.inf.ed.ac.uk/rbf/HIPR2 image processing learning resources][[Documents|in "Documents", image processing tools]] | *[http://homepages.inf.ed.ac.uk/rbf/HIPR2 image processing learning resources][[Documents|in "Documents", image processing tools]] | ||
| − | *[http://q-bio.jp/wiki/News#Biology.2FGenetics.2FEvolution_Postdoctoral_Fellow_Position.2C__Fred_Hutchinson_Cancer_Research_Center_.28091006.29_New.21.21 | + | *[http://q-bio.jp/wiki/News#Biology.2FGenetics.2FEvolution_Postdoctoral_Fellow_Position.2C__Fred_Hutchinson_Cancer_Research_Center_.28091006.29_New.21.21 Biology/Genetics/Evolution Postdoctoral Fellow Position, Fred Hutchinson Cancer Research Center (091006)][[News|in "News", Job opportunity]] |
==Core members== | ==Core members== | ||
| − | *'''Kazuhiro Aoki''' ( | + | *'''Kazuhiro Aoki''' (Kyoto University) |
| − | *''' | + | *'''Hiroshi Ito''' (Kyushu University) |
| − | *''' | + | *'''Seiichi Uchida''' (Kyushu University) |
| − | *''' | + | *'''Hiromasa Oku''' (Gunma University) |
| − | *''' | + | *'''Shinji Kajita''' (Fukui University) |
| − | *''' | + | *'''Takanobu A Katoh''' (The University of Tokyo) |
| − | *'''Akatsuki Kimura'''(Cell Architecture Laboratory, National Institute of Genetics) | + | *'''Akatsuki Kimura''' (Cell Architecture Laboratory, National Institute of Genetics) |
| − | *''' | + | *'''Katsuyuki Kunida''' (Fujita Health University) |
| − | |||
| − | |||
| − | |||
*'''Tetsuya J. Kobayashi''' (Institute of Industrial Science, the University of Tokyo) | *'''Tetsuya J. Kobayashi''' (Institute of Industrial Science, the University of Tokyo) | ||
| − | *''' | + | *'''Kaoru Sugimura''' (Graduate School of Science, the University of Tokyo) |
| − | *''' | + | *'''Takao K Suzuki''' (Graduate School of Frontier Sciences, the University of Tokyo) |
| − | + | *'''Madoka Suzuki''' (Osaka University) | |
| − | |||
| − | *'''Madoka Suzuki''' ( | ||
*'''Hiroaki Takagi''' (Department of Physics, School of Medicine, Nara Medical University) | *'''Hiroaki Takagi''' (Department of Physics, School of Medicine, Nara Medical University) | ||
| + | *'''Jun-nosuke Teramae''' (Kyoto University) | ||
*'''Yuki Tsukada''' (Division of Biological Science, Graduate School of Science, Nagoya University) | *'''Yuki Tsukada''' (Division of Biological Science, Graduate School of Science, Nagoya University) | ||
| − | *''' | + | *'''Itoshi Nikaido''' (RIKEN, Tokyo Medical and Dental University) |
| − | *''' | + | *'''Shigenori Nonaka''' (NIBB) |
| − | *''' | + | *'''Kayo Hibino'''(National Institute of Genetics) |
| − | + | *'''Tsuyoshi Hirashima''' (MBI) | |
| − | *''' | + | *'''Noriko Hiroi''' (KAIT & Keio University School of Medicine) |
| − | *'''Noriko Hiroi''' ( | ||
| − | |||
*'''Akira Funahashi''' (Department of Biosciences and Informatics, Keio University) | *'''Akira Funahashi''' (Department of Biosciences and Informatics, Keio University) | ||
| − | *'''Yusuke T. Maeda''' ( | + | *'''Yusuke T. Maeda''' (Kyushu University) |
| − | *''' | + | *'''Takashi Murata''' (KAIT) |
<br> | <br> | ||
<br> | <br> | ||
| + | tentatively away:<br> | ||
| + | *'''Yukinobu Arata''' (RIKEN, Advanced Science Institute) | ||
| + | *'''Rinshi S. Kasai''' (Institute for Integrated Cell-Material Sciences,Kyoto University) | ||
| + | *'''Shuji Ishihara''' (Meiji University) | ||
| + | *'''Kazuhisa Kinoshita''' (RIKEN Advanced Science Institute) | ||
| + | *'''Hiroshi Kimura''' (Department of Mechanical Engineering, Tokai University) | ||
| + | *'''Satoshi Sawai''' (Graduate School of Arts and Sciences, University of Tokyo) | ||
| + | *'''Hidekazu Tsutsui''' (JAIST) | ||
| + | *'''Takahiro Harada''' | ||
| + | *'''Yutaka Matsubayashi''' (Bournemouth University) | ||
| + | |||
== Acknowledgement == | == Acknowledgement == | ||
We are grateful to Dr. Aitor Gonza ́ lez (Institute for Virus Research, Kyoto University, Japan) , Dr. Jonathan James Ward (Cellular architecture Group, Cell Biology and Biophysics Unit, EMBL-Heidelberg, Germany), Kris Popendorf (Bioinformatics Laboratory, Department of Bioscience and Informatics, Keio University, Japan) for kindly editing of the English manuscript of this webpage with helpful comments. | We are grateful to Dr. Aitor Gonza ́ lez (Institute for Virus Research, Kyoto University, Japan) , Dr. Jonathan James Ward (Cellular architecture Group, Cell Biology and Biophysics Unit, EMBL-Heidelberg, Germany), Kris Popendorf (Bioinformatics Laboratory, Department of Bioscience and Informatics, Keio University, Japan) for kindly editing of the English manuscript of this webpage with helpful comments. | ||
Latest revision as of 10:47, 16 January 2024
news!(19/10/2015)
We will hold
NIG International Symposium 2016 + ROIS Event
and Toyoda Physical & Chemical Research Institute Workshop
on Jan 8th ~ 13th, 2016.
Japan q-bio week (Jan/8/2016~Jan/13/2016)
We have a series of international symposiums and workshops (Japan q-bio week) 8/Jan/2016 to 13/2016 instead of the annual meeting of the Japanese Society for Quantitative Biology. Most of them will be held as NIG International Symposium 2016. All these symposiums and workshops are organized by the core-members of Japanese Society for Quantitative Biology.
- Tokyo Workshops
- Date: Jan/8/2016
- Site:Institute of Industrial Science, Bld. S , the Univ. Tokyo, Komaba
- NIG International Symposium 2016 satellite workshop (9:00 - 12:00) Bridging Theory & Experiment
- Toyoda Physical & Chemical Research Institute Workshop (13:00 - 18:00) Entropy, Information & Control
- NIG International Symposium - Tokyo Symposium: Force, Information and Dynamics: X factors shaping living systems
- Date:Jan/9/2016~Jan/11/2016
- Site:Institute of Industrial Science, Bld. An, the Univ Tokyo Komaba
- ROIS Event - Mishima Symposium:Quantitative Biology - force, information and dynamics
- Date:Jan/12/2016~Jan/13/2016
- Site:National Institute of Genetics
What is the Japanese Society for Quantitative Biology
(Q-BioJP)?
The Japanese Society for Quantitative Biology (Q-BioJP) is a non-profit organization founded in 2008 that is dedicated to the advancement of the field of quantitative biology.
The mission of the Q-BioJP is to
- bring together the various fields of biological research that will benefit from quantitative analysis
- provide an interdisciplinary forum for research, and to provide opportunities for collaboration in quantitative biology
- promote the field of quantitative biology and to advance our understanding of biological systems.
Background of the foundation
A PERIOD OF TRANSITION
Biology is in a period of transition, from being a mostly descriptive and qualitative discipline towards being more analytical and quantitative. It is hoped that this change in emphasis will produce insights, and also new technologies. These approaches will be carried out by a new kind of biologist who can deal with the requirements of this new field.
A FUTURE GOAL OF BIOLOGY
While most of modern biology was focused on the properties of individual molecules, a future goal will be to understand their dynamics, and will require finding new ways of thinking and analysing these processes at a level beyond the individual components and their static properties. For solutions to these comprehensive questions, biology is now looking to other disciplines. Systems Biology has built strong links between Biology, Computer Sciences, and Mathematics to develop integrated approaches to deal with recent explosive increase in biological knowledge.
HOW TO APPROACH THE PRINCIPLES
Now to approach the principles that underlie their dynamical behaviors, the Physical and Chemical Sciences may provide a useful precedent. We also notice biological systems may have design principles that can be understood from an Engineering point of view.
Japanese "About us"
The Aim of the Q-BioJP
TO PROMOTE SPONTANEOUS ACTION
Our purpose is to promote spontaneous action of each scientist for the development of quantitative biology.
TO ESTABLISH AN INTERDISCIPLINARY ENVIRONMENT
To achieve this objective we plan to establish an interdisciplinary research environment; such an environment will accelerate the natural convergence of different but related fields, and the expansion research into at the interface of different areas of research.
The interactions fostered by us will transcend the boundaries between Biology and Physics, Chemistry, Engineering, Mathematics and Computational sciences.
TO FORM A COMMUNITY FOR DEVELOPMENTS OF THE FIELD
Above all, we aim to form a community that will be nourished by, and contribute to, the new developments which arise from the interdisciplinary research environment, and will provide the means for people with different approaches to related problems to come together and find novel and interesting solutions.
Japanese "About us"
Targeting Subject
We explore techniques and methods to quantify the physical properties that determine the dynamics of biological phenomena. Our main focus is on cellular-level biology, but we are also concerned with the structure and organization of cells. The behavior of cells is influenced by events at a molecular level and upwards to the tissue and organism level. A new-generation model of Q-BioJP can take initiatives at medical sciences such as pharmacokinetics and cancer research. Q-BioJP will strive to understand the various levels of biological systems and the relationships that exist between them.
Japanese "About us"
Agenda
To these ends, we operate the following three strategies:
1. An annual meeting to - foster excellence in research and education -
We organize an annual scientific meeting which consists of technical tutorials and sessions focused on selected topics.
- target audience: Scientists that have already begun a research in the field of quantitative biology or have concrete plans to start.
- objective: The meeting provides a program for the interdisciplinary community of quantitative biologists to promote sharing of information to solve technical problems in their research, and to promote discussions of our future direction.
The 5th Annual Meeting will be held on 23rd - 25th November 2012 at the Convention Hall in Institute of Industrial Science, the University of Tokyo.
5th Annual Meeting
Japanese Events
2. Caravan - scholarly dissemination of research -
- target audience: researchers who are interested in quantitative biology but require guidance in starting a research program in this area “quantitative biology”.
- objective: To showcase exciting examples of quantitative biology with an emphasis on the importance of the quantitative point of view in biology.
3. Mailing list
- objective : exchanging information on topics relating to quantitative biology.
- members in the list: There is no condition to participate our mailing list except your motivation. You can join anytime via a direct invitation by a core member. (This mailing list is basically managed in Japanese.)
All are welcome who would strive together to ensure the future of this new basic scientific field!
Links in English on q-bio.jp
- Institute of Industrial Science, the University of Tokyoin "Events"
- Graduate School of Medicine/Faculty of Medicine, Osaka Universityin "Events"
- National Institute of Geneticsin "Events"
- Japanese Society for Bioinformaticsin "Events"
- Synergetics by Hermann Hakenin "Documents", recommedned text books
- Differential Equations Dynamical Systems and an Introduction to Chaos by Dr. Morris W. Hirsch, Dr. Stephen Smale and Dr. Robert Devaneyin "Documents", recommedned text books
- Nonlinear Dynamics And Chaos With Applications To Physics, Biology, Chemistry, And Engineering by Steven H. Strogatzin "Documents", recommedned text books
- Random Walks in Biology by Howard C. Bergin "Documents", recommedned text books
- Biological Physics of the Developing Embryo by Gabor Forgacs and Stuart A. Newmanin "Documents", recommedned text books
- Mathematical Physiology by James Keener, James Sneydin "Documents", recommedned text books
- Physical Biology of the Cell by Rob Phillips, Jane Kondev, Julie Theriotin "Documents", recommedned text books
- An Introduction to Systems Biology - Design Principles of Biological Circuits by Uri Alonin "Documents", recommedned text books
- micromanagerin "Documents", image processing tools
- MathWorks Image Proecssing Toolboxin "Documents", image processing tools
- image processing learning resourcesin "Documents", image processing tools
- Biology/Genetics/Evolution Postdoctoral Fellow Position, Fred Hutchinson Cancer Research Center (091006)in "News", Job opportunity
Core members
- Kazuhiro Aoki (Kyoto University)
- Hiroshi Ito (Kyushu University)
- Seiichi Uchida (Kyushu University)
- Hiromasa Oku (Gunma University)
- Shinji Kajita (Fukui University)
- Takanobu A Katoh (The University of Tokyo)
- Akatsuki Kimura (Cell Architecture Laboratory, National Institute of Genetics)
- Katsuyuki Kunida (Fujita Health University)
- Tetsuya J. Kobayashi (Institute of Industrial Science, the University of Tokyo)
- Kaoru Sugimura (Graduate School of Science, the University of Tokyo)
- Takao K Suzuki (Graduate School of Frontier Sciences, the University of Tokyo)
- Madoka Suzuki (Osaka University)
- Hiroaki Takagi (Department of Physics, School of Medicine, Nara Medical University)
- Jun-nosuke Teramae (Kyoto University)
- Yuki Tsukada (Division of Biological Science, Graduate School of Science, Nagoya University)
- Itoshi Nikaido (RIKEN, Tokyo Medical and Dental University)
- Shigenori Nonaka (NIBB)
- Kayo Hibino(National Institute of Genetics)
- Tsuyoshi Hirashima (MBI)
- Noriko Hiroi (KAIT & Keio University School of Medicine)
- Akira Funahashi (Department of Biosciences and Informatics, Keio University)
- Yusuke T. Maeda (Kyushu University)
- Takashi Murata (KAIT)
tentatively away:
- Yukinobu Arata (RIKEN, Advanced Science Institute)
- Rinshi S. Kasai (Institute for Integrated Cell-Material Sciences,Kyoto University)
- Shuji Ishihara (Meiji University)
- Kazuhisa Kinoshita (RIKEN Advanced Science Institute)
- Hiroshi Kimura (Department of Mechanical Engineering, Tokai University)
- Satoshi Sawai (Graduate School of Arts and Sciences, University of Tokyo)
- Hidekazu Tsutsui (JAIST)
- Takahiro Harada
- Yutaka Matsubayashi (Bournemouth University)
Acknowledgement
We are grateful to Dr. Aitor Gonza ́ lez (Institute for Virus Research, Kyoto University, Japan) , Dr. Jonathan James Ward (Cellular architecture Group, Cell Biology and Biophysics Unit, EMBL-Heidelberg, Germany), Kris Popendorf (Bioinformatics Laboratory, Department of Bioscience and Informatics, Keio University, Japan) for kindly editing of the English manuscript of this webpage with helpful comments.
